seqwalk.analysis

Module Contents

Functions

hamming(seq1, seq2)	compute hamming distance of two sequences
hamming_matrix(library)	matrix where element i, j is H distance between seq i and seq j

seqwalk.analysis.hamming(seq1, seq2)

compute hamming distance of two sequences

Parameters:

• seq1 – string

• seq2 – string

Returns:

int

hamming distance

seqwalk.analysis.hamming_matrix(library)

matrix where element i, j is H distance between seq i and seq j

Parameters:

library – list of strings of equal length

Returns:

hdists

hamming distance “heatmap”

Return type:

NxN numpy array