seqwalk.analysis
================

.. py:module:: seqwalk.analysis


Functions
---------

.. autoapisummary::

   seqwalk.analysis.hamming
   seqwalk.analysis.hamming_matrix


Module Contents
---------------

.. py:function:: hamming(seq1, seq2)

   compute hamming distance of two sequences

   :param seq1: string
   :param seq2: string

   :returns:

             int
                 hamming distance


.. py:function:: hamming_matrix(library)

   matrix where element i, j is H distance between seq i and seq j

   :param library: list of strings of equal length

   :returns:

             hdists
                 hamming distance "heatmap"
   :rtype: NxN numpy array